MPS Case study in bioinformatics posted as a preprint

Hello,

I wanted to let you know we posted a preprint of a manuscript describing an evaluation of MPS in bioinformatics. The preprint is available at arXiv.org and Preprint PeerJ (https://peerj.com/preprints/112/). Feedback welcome (see the bottom of the PeerJ page).

Best, Fabien Campagne
5 comments

Thank you for sharing, Fabien. It nicely wraps the pros and cons of MPS for DSL development, in my opinion. Do you think we could link to the final version of your paper from the MPS website?

Vaclav
0
Hello Vaclav,

Thanks for your feedback. The manuscript has now been submitted for
peer-review and we will see how long it takes to clear the process. In the
mean time, we will update the pre-print to the version submitted for
peer-review (should be online early next week). Feel free to link to the
pre-print at PeerJ, which we will keep updating to fix typos and add
clarifications, otherwise I will notify you when the final peer-reviewed
version has been published.

Fabien




On Thu, Nov 28, 2013 at 8:30 AM, Vaclav Pech - Meta Programming System <
jetforum@jetbrains.com> wrote:

* Meta Programming System
<http://forum.jetbrains.com/forum/Meta-Programming-System> * > * MPS Case
study in bioinformatics posted as a preprint
<http://forum.jetbrains.com/thread/Meta-Programming-System-913> * 8:30 am<http://forum.jetbrains.com/thread/Meta-Programming-System-913?message=Meta-Programming-System-913-1>  Vaclav
Pech <http://forum.jetbrains.com/user/venca> via email


Thank you for sharing, Fabien. It nicely wraps the pros and cons of MPS
for DSL development, in my opinion. Do you think we could link to the final
version of your paper from the MPS website?

Vaclav

   Fabien Campagne<http://forum.jetbrains.com/user/fac2003@campagnelab.org>@ Nov
22 <http://forum.jetbrains.com/thread/Meta-Programming-System-913>

Hello,

I wanted to let you know we posted a preprint of a manuscript describing
an evaluation of MPS in bioinformatics. The preprint is available at
arXiv.org and Preprint PeerJ (https://peerj.com/preprints/112/). Feedback
welcome (see the bottom of the PeerJ page).

Best, Fabien Campagne

  JetBrains Forum | Build #173 (Sep/19/2013 4:50PM) | Feedback<http://confluence.jetbrains.net/display/JETF/Feedback>




--
Fabien Campagne, PhD – http://campagnelab.org

Assistant Professor,    Dept. of Physiology and Biophysics
          Institute for Computational Biomedicine
Associate Director,      Biomedical Informatics Core,
       Clinical Translational Science Center

Weill Medical College of Cornell University
phone:  (646)-962-5613  1305 York Avenue
fax:    (646)-962-0383  Box 140
New York, NY 10021

Do you speak next-gen?

See how GobyWeb can help simplify your NGS projects at
http://gobyweb.campagnelab.org
0
Thank you, Fabien. It will be my pleasure to link to the pre-print
version for now.

Vaclav


On 28.11.2013 16:36, Fabien Campagne - Meta Programming System wrote:

*Meta Programming System
<http://forum.jetbrains.com/forum/Meta-Programming-System> * > *MPS
Case study in bioinformatics posted as a preprint
<http://forum.jetbrains.com/thread/Meta-Programming-System-913> *
10:36 am
<http://forum.jetbrains.com/thread/Meta-Programming-System-913?message=Meta-Programming-System-913-2>
Fabien Campagne
<http://forum.jetbrains.com/user/fac2003@campagnelab.org> via email

Hello Vaclav,

Thanks for your feedback. The manuscript has now been submitted for
peer-review and we will see how long it takes to clear the process. In the
mean time, we will update the pre-print to the version submitted for
peer-review (should be online early next week). Feel free to link to the
pre-print at PeerJ, which we will keep updating to fix typos and add
clarifications, otherwise I will notify you when the final peer-reviewed
version has been published.

Fabien




On Thu, Nov 28, 2013 at 8:30 AM, Vaclav Pech - Meta Programming System <
jetforum@jetbrains.com> wrote:

* Meta Programming System
<http://forum.jetbrains.com/forum/Meta-Programming-System> * > * MPS Case
study in bioinformatics posted as a preprint
<http://forum.jetbrains.com/thread/Meta-Programming-System-913> * 8:30
am<http://forum.jetbrains.com/thread/Meta-Programming-System-913?message=Meta-Programming-System-913-1>
Vaclav
Pech <http://forum.jetbrains.com/user/venca> via email


Thank you for sharing, Fabien. It nicely wraps the pros and cons of MPS
for DSL development, in my opinion. Do you think we could link to the
final
version of your paper from the MPS website?

Vaclav

Fabien
Campagne<http://forum.jetbrains.com/user/fac2003@campagnelab.org>@ Nov
22 <http://forum.jetbrains.com/thread/Meta-Programming-System-913>

Hello,

I wanted to let you know we posted a preprint of a manuscript describing
an evaluation of MPS in bioinformatics. The preprint is available at
arXiv.org and Preprint PeerJ (https://peerj.com/preprints/112/). Feedback
welcome (see the bottom of the PeerJ page).

Best, Fabien Campagne

JetBrains Forum | Build #173 (Sep/19/2013 4:50PM) |
Feedback<http://confluence.jetbrains.net/display/JETF/Feedback>





Fabien Campagne, PhD – http://campagnelab.org

Assistant Professor, Dept. of Physiology and Biophysics
Institute for Computational Biomedicine
Associate Director, Biomedical Informatics Core,
Clinical Translational Science Center

Weill Medical College of Cornell University
phone: (646)-962-5613 1305 York Avenue
fax: (646)-962-0383 Box 140
New York, NY 10021

Do you speak next-gen?

See how GobyWeb can help simplify your NGS projects at
http://gobyweb.campagnelab.org

     Vaclav Pech <http://forum.jetbrains.com/user/venca> @ 8:30 am
     <http://forum.jetbrains.com/thread/Meta-Programming-System-913?message=Meta-Programming-System-913-1>



     Thank you for sharing, Fabien. It nicely wraps the pros and cons
     of MPS for DSL development, in my opinion. Do you think we could
     link to the final version of your paper from the MPS website?

     Vaclav

JetBrains Forum | Build #173 (Sep/19/2013 4:50PM) | Feedback
<http://confluence.jetbrains.net/display/JETF/Feedback>
0
Vaclav, Just to let you know the paper was peer-reviewed and is now
published online at http://dx.doi.org/10.7717/peerj.241 It can be cited as:

Simi M, Campagne F. (2014) Composable languages for bioinformatics: the
NYoSh experiment. PeerJ 2:e241 http://dx.doi.org/10.7717/peerj.241
0
Congratulations, Fabien. Thanks for letting me know. We’ll update the link to point to the final paper location.

Vaclav
0

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